rs29633538 SNP Detail

Summary

• ID
  rs29633538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107851011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCGTCTGTA ACTCCAGTTC CAGAGGATTC TACACCCTTT
  TCTGGCTTCC ACAGGCACCA GGTATATGTG GCACATATAC ACACAGGCAA AACAACCATA
  Y
  GTGCAACATT AAAAACAGAT CAAAGCCAGG TGTGGTGGCG CACGTCTTTA ATCCCAGCAC
  TTGGGAGGCA GAGGCAGGCG GATTTCTGAG TTCGGGGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46323999	mCV25005315	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	T
ss136951188	ENSMUSSNP5204441	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29633538					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107851011 () rs orientation: forward

Symbol	Name	Function Class
Rr368862	regulatory region 368862	1920 bp upstream
Rr401669	regulatory region 401669	1589 bp upstream
Rr686670	regulatory region 686670	955 bp distal
Rr686671	regulatory region 686671	1411 bp distal
Rr686672	regulatory region 686672	1232 bp proximal
Traip	TRAF-interacting protein	1542 bp downstream
Tssr87038	transcription start site region 87038	1698 bp downstream
Tssr87039	transcription start site region 87039	1684 bp upstream
Tssr87040	transcription start site region 87040	1717 bp upstream
Tssr87041	transcription start site region 87041	1798 bp upstream
Tssr87042	transcription start site region 87042	1810 bp upstream
Tssr87043	transcription start site region 87043	1831 bp upstream
Tssr87044	transcription start site region 87044	1840 bp upstream
Uba7	ubiquitin-like modifier activating enzyme 7	1755 bp upstream