rs29633978 SNP Detail

Summary

• ID
  rs29633978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115078293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA AAACAACAAC AAAAACAACA
  Y
  ACACACAAAA AAAATGAAGT GTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45847552	mCV25153125	ABI	CRAMUS_MOUSE	f	SNP		C	C	T
ss149119399	ENSMUSSNP1313860	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29633978					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115078293 () rs orientation: forward

Symbol	Name	Function Class
2210016L21Rik	RIKEN cDNA 2210016L21 gene	1920 bp upstream
Cpgi16342	CpG island 16342	1823 bp proximal
Rr399277	regulatory region 399277	1814 bp upstream
Rr618069	regulatory region 618069	1107 bp proximal
Rr618070	regulatory region 618070	1471 bp proximal
Rr618071	regulatory region 618071	1948 bp proximal
Tssr48192	transcription start site region 48192	1942 bp upstream
Tssr48193	transcription start site region 48193	1982 bp upstream