rs29634004 SNP Detail

Summary

• ID
  rs29634004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112499956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGAAGT GTGGCGCACA
  CACATGCATG CACACACATG CATGCACACA CCCTCTCCTC CCCATGCTGG GTCCATGTGC
  CCTGTTTCAC ACTGTGGATC TAAGGCTGTT GTCTTCCTTC TGCCTGACTC TGGCTAAGCA
  GCCTACAAGG CTCTGACTCA GCCCCTCGTG GTTCCTCTCT GTCATCCCTC CAGGACACCC
  Y
  TGCACTGGGC TGCAGCTTCT GGAAAGGCAG AATGTGTCCA GTCACTGCTG GATCTGGGCA
  TGGACAGCAA CCTAAGGGAC ATTAACGAGA GCACGCCCCT GGCCTACGCC TTGTACTGCG
  GTCACACGGC CTGTGTCCGG CTCCTTTCCC GAGAAGGCCG GTGAGTGTAT CCACTGTCCT
  CCTCTCAAAG ATTTACAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39103541	mCV23355083	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145237608	ENSMUSSNP2044003	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29634004					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112499956 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Gm48837	predicted gene, 48837	within coordinates
Rr278286	regulatory region 278286	1460 bp distal
Rr282338	regulatory region 282338	within coordinates
Tssr121108	transcription start site region 121108	within coordinates
Tssr121109	transcription start site region 121109	24 bp upstream