rs29634070 SNP Detail

Summary

• ID
  rs29634070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAAACAGC AGTCCTACAA GTCATCAACT CTGTGTGACG
  TTGGGTTTCC TGCAGTGCTA CCTGTCTTGA GCAGTTCTGT GCCCTGACAC AAAGCAAATC
  Y
  GGTGCTCTGT GTAAGTGAAC GCAGTGGGAC CACCGCGCTG ACTCATGATC TGCGGGCTCT
  CTTTGGGAGC CCTGGAAGTG TCTCAGGGAG GAAAATGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46324203	mCV24902302	ABI	CRAMUS_MOUSE	f	SNP	C	C				C		T
ss50674829	NES14008192	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C		C		C	C	T	C
ss136309793	ENSMUSSNP4903186	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29634070					SNP	C	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674829	NES14008192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	213 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	397 bp distal
Rr676657	regulatory region 676657	292 bp distal
Rr676658	regulatory region 676658	73 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	236 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	387 bp upstream
Tssr88821	transcription start site region 88821	436 bp upstream
Tssr88822	transcription start site region 88822	408 bp upstream
Tssr88823	transcription start site region 88823	381 bp upstream
Tssr88824	transcription start site region 88824	358 bp upstream
Tssr88825	transcription start site region 88825	339 bp upstream
Tssr88826	transcription start site region 88826	247 bp upstream
Tssr88827	transcription start site region 88827	165 bp upstream
Tssr88828	transcription start site region 88828	135 bp upstream
Tssr88829	transcription start site region 88829	117 bp upstream
Tssr88830	transcription start site region 88830	89 bp upstream
Tssr88831	transcription start site region 88831	56 bp upstream