rs29634207 SNP Detail

Summary

• ID
  rs29634207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138085912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATTCAATC AAGTGTTGTT TGACTCAAGC CAGGGCCTTA
  GACTTCATGC ACTTTGCCAC TGAACATCAT CCCTGGCCTT TTTTGCATTT TTTTATTTGT
  Y
  TTGTTGATGT TTGGGGGTTT TGTTGTTGGT TGTTTTGATT TGGTCTTGGC TTTTAAGATG
  TCTTTTTATA GCTCAGGATG GCAGTGAGCT TCTTGTCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45844884	mCV22888302	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss144537743	ENSMUSSNP6888739	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29634207					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138085912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16852	CpG island 16852	1976 bp distal
Gm57302	predicted gene, 57302	1637 bp upstream
Rr124606	regulatory region 124606	511 bp distal
Tssr49410	transcription start site region 49410	1633 bp upstream
Zkscan1	zinc finger with KRAB and SCAN domains 1	within coordinates