rs29634582 SNP Detail

Summary

• ID
  rs29634582
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117256126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGAACATTCG TTCTGGGTCG CATTTCTTTT GACATTTCCT ATTTGCTACC TTGTTTTAAT
  TAAATCTTGG CTCTCTTTGT AAGAAAGAGT TCCTCTCTGC AGAAATGCAA GAATGTCCAG
  AATGCAAAGC TGGGACGGCT TTTCCAGCAG CTCGGGATCT GAAGCCCCTT CTCGACAAGA
  GTCCTTCTTC AAGCCCAGCC TCAGCAGAGG TTCTCGGAGC TGTCTCTTCT CCAGAGGATG
  AGGTCAGCTT CCTGCGTGTG CTTGTTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  S
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTAAACTGT TGGAACACAT
  GTAGACTATT TGTAATCCAG CACACTGTGG GATCGCAGCT CCCAATACTA TTAAAGAAGC
  AACAAATTAA CAGGCATCAT TTTTTGAACT CAGAATCCAT TGATACAATG AAACAAATGA
  CAGTTGGGTT TGTTACTAAA CTGTGTGTAA TCTTGTTTTG TGTTTAACTT TTATTTCTGT
  CTCCCTGATT ACAGACAGCC AGTGTTAGTC TTCATGCGTT TCTGTTTTAC ATGGATTACA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45846566	mCV23379595	ABI	CRAMUS_MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29634582					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117256126 () rs orientation: forward

Symbol	Name	Function Class
9530046B11Rik	RIKEN cDNA 9530046B11 gene	within coordinates
Cpgi16404	CpG island 16404	1629 bp distal
Cpgi16405	CpG island 16405	1662 bp proximal
Gm57263	predicted gene, 57263	546 bp downstream
Rr399292	regulatory region 399292	1780 bp upstream
Rr618568	regulatory region 618568	1458 bp distal
Rr618569	regulatory region 618569	1802 bp distal
Rr618570	regulatory region 618570	5 bp distal
Rr618571	regulatory region 618571	708 bp proximal
Rr618572	regulatory region 618572	1367 bp proximal
Rr618573	regulatory region 618573	1972 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	mRNA-UTR
Tssr52879	transcription start site region 52879	1964 bp upstream
Tssr52880	transcription start site region 52880	1815 bp downstream