rs29634974 SNP Detail

Summary

• ID
  rs29634974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97724849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA GGTTGAGGCC AACCTCACCT
  Y
  CCCTAAATGC AAACTTGTGG ATTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss39102171	mCV24944175	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss145037460	ENSMUSSNP4787594	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324497246	CHEV_13_98358296	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29634974					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97724849 () rs orientation: forward

Symbol	Name	Function Class
D13Mit147	DNA segment, Chr 13, Massachusetts Institute of Technology 147	784 bp proximal
Gm2379	predicted gene 2379	within coordinates
Gm61499	predicted gene, 61499	226 bp upstream
Rr274323	regulatory region 274323	849 bp distal
Rr280768	regulatory region 280768	980 bp distal
Rr285535	regulatory region 285535	1352 bp proximal
Rr388932	regulatory region 388932	1533 bp downstream
Rr388933	regulatory region 388933	within coordinates
Tssr120789	transcription start site region 120789	1628 bp upstream
Tssr123601	transcription start site region 123601	219 bp upstream