rs29635074 SNP Detail

Summary

• ID
  rs29635074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23625273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT AATTGGGGTC TTTTCATAGG
  R
  AAATCTGTAT TGCAAGTGCT TAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45847068	mCV23735839	ABI	CRAMUS_MOUSE	f	SNP	A	G			G		A
ss47624403	NES10278155	PERLEGEN	MM_PANEL2	f	SNP		G	A	G		A	A	A	A		A	A		A
ss148057301	ENSMUSSNP5063158	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G					A
ss321488930	CHEV_5_22926093	CHEVERUD	SCREENING_POP	f	SNP										A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29635074					SNP	A	G	A	G	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624403	NES10278155	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23625273 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15579	CpG island 15579	1555 bp distal
Gm57286	predicted gene, 57286	1681 bp upstream
Gm72704	predicted gene, 72704	1119 bp downstream
Rr608096	regulatory region 608096	1966 bp distal
Rr608097	regulatory region 608097	1952 bp distal
Rr608098	regulatory region 608098	1751 bp distal
Rr608099	regulatory region 608099	1191 bp distal
Tssr45362	transcription start site region 45362	1625 bp downstream
Tssr50265	transcription start site region 50265	1718 bp upstream