rs29635179 SNP Detail

Summary

• ID
  rs29635179
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12474652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTGCAT TCCAAGCGCT
  GGGATTAAAG GCATGTGCCA CCATGCCTGG CCTTAAATGA AATAATTTTA AGTGATCAGT
  GCAGGAATTA TTTAAAAAAT ATGTAAGGAG GAAATTACAT GAAGTTTCCT GTTAAAAATA
  CTAAAACTGT AAGTGTGGTG GCACAATACC TGTGATCGAA GCCACTTGTG AGCAAGCCTG
  M
  GACAGGAAGA ACAATTGGAC CCTAGCCTAG GTGAGTTAGA TCCCGTGTGG CAGGCAGTTC
  ACATAAGAAT GGCTCCCATA GGTTCATAGG TTTGAATGCT TAATCACCAA AGAGTGGAAC
  TATTTAAAAG GATTAAGAGG TATAGCCCAA GCCAGGCCCA GTGCCTCTCC CTTCCTGCGG
  CCTGGGAATC CGGATGTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39100886	mCV22708354	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss148681900	ENSMUSSNP1105098	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29635179					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12474652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	1188 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	148 bp proximal
Rr369646	regulatory region 369646	812 bp upstream
Rr369647	regulatory region 369647	1378 bp upstream
Tssr118345	transcription start site region 118345	899 bp upstream
Tssr121451	transcription start site region 121451	645 bp upstream
Tssr121452	transcription start site region 121452	489 bp upstream
Tssr121453	transcription start site region 121453	1328 bp downstream
Tssr121454	transcription start site region 121454	1639 bp downstream
Tssr121455	transcription start site region 121455	1661 bp downstream
Tssr121456	transcription start site region 121456	1767 bp downstream
Tssr121457	transcription start site region 121457	1791 bp downstream