rs29636481 SNP Detail

Summary

• ID
  rs29636481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64644725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCCCCTT TCTCACCTAT GTCTAATCCA TAGTCCCCCG
  TCGTGGGATC TTAGATCTTG GGGGCAACTT GATATCTTCT CTCCATTTCC ACATGCCTAA
  R
  AAGGTCAATT ATGATGTTTC CCCCCTTTTA TAAAACAGAG AGGCAAGATG GCGTCCAAAG
  CTGATTATGA AGGAGGAGGT TCATCCTCAG CAACCTTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45848935	mCV22372403	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		A
ss61173183	NES16687540	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	A		A	A	G	G		G	A	A		A
ss148570938	ENSMUSSNP3488043	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss321560862	CHEV_5_64878621	CHEVERUD	SCREENING_POP	f	SNP													A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29636481					SNP	G	G	G	G	A	G	A	G	A	A	G	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173183	NES16687540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64644725 () rs orientation: forward

Symbol	Name	Function Class
Gm57288	predicted gene, 57288	476 bp upstream
Rr118672	regulatory region 118672	1876 bp proximal
Rr122953	regulatory region 122953	1029 bp distal
Rr131555	regulatory region 131555	183 bp distal
Rr367844	regulatory region 367844	433 bp upstream
Tssr46401	transcription start site region 46401	470 bp upstream