rs29637165 SNP Detail

Summary

• ID
  rs29637165
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37465064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT AAATCTTCAG GGTGGGGTGG
  K
  ACCTCATAAG CCCCTCCTCT TTCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46325986	mCV25237932	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T	G
ss136310624	ENSMUSSNP608584	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29637165					SNP	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37465064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	879 bp distal
Gm46107	predicted gene, 46107	1676 bp upstream
Nrgn	neurogranin	1023 bp upstream
Rr676716	regulatory region 676716	875 bp distal
Rr676717	regulatory region 676717	419 bp distal
Rr676718	regulatory region 676718	420 bp proximal
Rr676719	regulatory region 676719	1389 bp proximal
Rr676720	regulatory region 676720	1652 bp proximal
Tssr84410	transcription start site region 84410	1846 bp upstream
Tssr84411	transcription start site region 84411	1869 bp upstream
Tssr84412	transcription start site region 84412	1877 bp upstream
Tssr84413	transcription start site region 84413	1903 bp upstream
Tssr84414	transcription start site region 84414	1925 bp upstream
Tssr88858	transcription start site region 88858	1057 bp upstream
Tssr88859	transcription start site region 88859	1027 bp upstream
Tssr88860	transcription start site region 88860	786 bp upstream
Tssr88861	transcription start site region 88861	371 bp upstream