rs29637167 SNP Detail

Summary

• ID
  rs29637167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44219017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAATCAT TTTGTCTGTG
  TCCTATGTAA ATAAAAGTTT AGAGACAACA TAAAAATAGG TCAAGTTGAG CCAGGTGTTC
  ACAGGCCTGT AAACCCAAAT CTGCTGCAGC TGTGGAGGCA GAAAGATCCT ACAGGCAATG
  TCTCGAGAAA GAGAATGTAG CTGTGGTCAT GATACCTCAC TTCTATAATC CTGTGTAGGC
  Y
  TGGCTGGCCT TGAACTCACA GAGCTCTGCC TGCCTCTGCC TTCCGAGTGC TGGGATTAAA
  GGCATGCACC ACTACAACTA GCTACGATTT ACTTCTTTAA TGTCTACAAG TATTTGCTGC
  ATGGATGTGG GTACAGCATG TGTGTGCTGT GACTGCAGAG GCCAAAAGAG GGCATCAGAT
  CCTCCCTGTA ATTGGAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46325988	mCV23033167	ABI	CRAMUS_MOUSE	f	SNP	T		C	C	C
ss136393688	ENSMUSSNP911106	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29637167					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44219017 () rs orientation: forward

Symbol	Name	Function Class
C2cd2l	C2 calcium-dependent domain containing 2-like	1517 bp downstream
Cpgi21648	CpG island 21648	1646 bp distal
Rr195005	regulatory region 195005	within coordinates
Rr206299	regulatory region 206299	1416 bp distal
Rr368726	regulatory region 368726	1625 bp downstream