rs29637866 SNP Detail

Summary

• ID
  rs29637866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:38763301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGATCCACC TGCCTCTGCC TCCTGGGTGC TGGATCTAGG
  ACATCACTAT TCTGGATCTT GGCTGTTCAC GTGCCCCCTG AGCCTTCATG CAGTGCCTAG
  R
  CTTCCTTACC AGGAACTGTG ATTCCTTAAA TCTCAGGTGG GTTAGTGGTT TTGTTTTTTG
  AGGTACTGTT GAACTAATTT GGGGTCACAA GTCTGTACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	SM/J
ss39601303	mCV23939993	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss49269360	NES12726732	PERLEGEN	MM_PANEL2	f	SNP				A	G
ss146968961	ENSMUSSNP3191682	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325587768	CHEV_18_38789902	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	SM/J
rs29637866					SNP	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49269360	NES12726732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:38763301 () rs orientation: forward

Symbol	Name	Function Class
9630014M24Rik	RIKEN cDNA 9630014M24 gene	within coordinates
Arhgap26	Rho GTPase activating protein 26	within coordinates
Cpgi9980	CpG island 9980	1204 bp proximal
Gm58701	predicted gene, 58701	1845 bp downstream
Rr393574	regulatory region 393574	674 bp downstream
Rr393575	regulatory region 393575	573 bp upstream
Rr536560	regulatory region 536560	1126 bp distal
Rr536561	regulatory region 536561	894 bp proximal
Tssr150807	transcription start site region 150807	1419 bp upstream
Tssr153047	transcription start site region 153047	1289 bp downstream
Tssr153048	transcription start site region 153048	1312 bp downstream
Tssr153049	transcription start site region 153049	1362 bp downstream