rs29638005 SNP Detail

Summary

• ID
  rs29638005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118755909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG CCTAATCAGC TTCATAGTCT
  Y
  ACCATTCCCA CCCAGTCCTT TCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45348880	mCV22545746	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss147317299	ENSMUSSNP2242546	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320472652	CHEV_2_118751164	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29638005					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118755909 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	900 bp downstream
Chst14	carbohydrate sulfotransferase 14	1069 bp upstream
Cpgi12099	CpG island 12099	858 bp proximal
Rr563380	regulatory region 563380	578 bp proximal
Rr563381	regulatory region 563381	1871 bp proximal
Tssr19592	transcription start site region 19592	1068 bp upstream
Tssr19593	transcription start site region 19593	1127 bp upstream
Tssr19594	transcription start site region 19594	1148 bp upstream