rs29638484 SNP Detail

Summary

• ID
  rs29638484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33123444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTTGGCCC AGACTACGTC ACTACTCCAG ATGCCTTAAC
  CCAGGTCTGA GTCACTGTGC ATTCCATGAC CGTGCTCTCA CTGTCATATG ACTCTTGAAC
  Y
  CTGGAAGTCT GTTTCAGAGT GCATGGTACT GTGCTAAAAT ACAGATCAAA AGCCCAGGGA
  GCCTCAGGAC ACCTCAACCC ATGCTTCTTC CTACTCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39101514	mCV24412967	ABI	CRAMUS_MOUSE	f	SNP		C	T				C	T
ss49079925	NES12435048	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T		T	C		C	C	C	C		C
ss148851131	ENSMUSSNP580449	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss324312365	CHEV_13_33031330	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29638484					SNP	C	C	T	C	C	T	C	T	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079925	NES12435048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33123444 () rs orientation: forward

Symbol	Name	Function Class
Gm11382	predicted pseudogene 11382	770 bp upstream
Rr476935	regulatory region 476935	840 bp distal
Rr476936	regulatory region 476936	within coordinates
Tssr122016	transcription start site region 122016	131 bp upstream
Tssr122017	transcription start site region 122017	1125 bp downstream
Tssr122018	transcription start site region 122018	1164 bp downstream