rs29638780 SNP Detail

Summary

• ID
  rs29638780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54537422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGAAACGT GAGGCCAGGG ACATGGCAGC CTGAGAGAAA
  TACAAGCTAG GCCAGGGGAG GGCACCAGAG AGAAGGCATT CCTGTGAATC TGAGTCCTAC
  Y
  CTGCAGCCCC AGGTCAGCAG CCCCAGTCTC CAACCCTCCC TTTTACAGAT TCCATCCACT
  AACCAGAAAG CTGAAGGAGG GATTGCAGAG TCAGGGTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46325511	mCV23898557	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136506560	ENSMUSSNP1564958	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29638780					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54537422 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	within coordinates
Rr195671	regulatory region 195671	1022 bp distal
Rr195672	regulatory region 195672	within coordinates
Rr195673	regulatory region 195673	779 bp proximal
Rr209598	regulatory region 209598	1379 bp proximal