rs29638973 SNP Detail

Summary

• ID
  rs29638973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99452134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACACCTAA AATCACGTCC TAGTATGCCT GCTACAACCA
  GGCAAATTGT AATTGTATAT AGCACACAAA AGCATTGACA ATTGTACAAT AGTCTCTATA
  Y
  GTGTGAGCTA TACCTCACCC AGAAACTCGG GCAATACATC TTCTAGGAAA CCCCTCCCTC
  GAGGAAGAAC TAGGTGACTC TCCCAACTCC ATATATTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46325604	mCV24326722	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss61443612	NES16826006	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		T	C	T	T	T	T	T	T	T
ss136848839	ENSMUSSNP4242290	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29638973					SNP	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443612	NES16826006	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99452134 () rs orientation: forward

Symbol	Name	Function Class
Armc8	armadillo repeat containing 8	1182 bp upstream
Cpgi22196	CpG island 22196	995 bp distal
Rr401625	regulatory region 401625	975 bp downstream
Rr685420	regulatory region 685420	1443 bp distal
Rr685421	regulatory region 685421	692 bp distal
Tssr91072	transcription start site region 91072	1403 bp upstream
Tssr91073	transcription start site region 91073	1170 bp upstream