rs29639076 SNP Detail

Summary

• ID
  rs29639076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATGGAGGG TGCAGAGCCG GCGCGCGTCC CGGCCAGCGG
  CGGCAGCGAT TTAAATGCCC CGCCGACTGG CCCGCCCCAG GCAGGCCCAT GGCCAGAGCC
  Y
  CCGCCCCTTG AACATGACCG GCCTGCCCTC TAGGTCGCGC CGAGTGCAAG TCCTAGCTAT
  CCCTCTGTGC TCACTAGCCA CTGTTTTCTA TGTACTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46326097	mCV24902295	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss136309790	ENSMUSSNP209028	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss322906505	CHEV_9_37063071	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29639076					SNP	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	within coordinates
Gm48081	predicted gene, 48081	12 bp upstream
Rr676656	regulatory region 676656	83 bp distal
Rr676657	regulatory region 676657	within coordinates
Rr676658	regulatory region 676658	23 bp proximal
Rr676659	regulatory region 676659	242 bp proximal
Rr676660	regulatory region 676660	550 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	73 bp upstream
Tssr88821	transcription start site region 88821	122 bp upstream
Tssr88822	transcription start site region 88822	94 bp upstream
Tssr88823	transcription start site region 88823	67 bp upstream
Tssr88824	transcription start site region 88824	44 bp upstream
Tssr88825	transcription start site region 88825	25 bp upstream
Tssr88826	transcription start site region 88826	44 bp downstream
Tssr88827	transcription start site region 88827	137 bp downstream
Tssr88828	transcription start site region 88828	160 bp downstream
Tssr88829	transcription start site region 88829	183 bp downstream
Tssr88830	transcription start site region 88830	199 bp downstream
Tssr88831	transcription start site region 88831	244 bp downstream