rs29639211 SNP Detail

Summary

• ID
  rs29639211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48407495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG GCCAGGAGGG CTTTTCTTAA
  R
  TAGTCACAAA GCTAGGTGAC TAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46324442	mCV25191861	ABI	CRAMUS_MOUSE	f	SNP		A					G	G
ss61394049	NES16775906	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A		G	G	G		G	A	G		A
ss322954391	CHEV_9_48304300	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29639211					SNP	A	A	G	A	G	A	G	G	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394049	NES16775906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48407495 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	within coordinates
Cpgi21716	CpG island 21716	175 bp distal
Gm5617	predicted gene 5617	223 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	896 bp upstream
Rr401354	regulatory region 401354	677 bp downstream
Tssr2862	transcription start site region 2862	297 bp upstream
Tssr84988	transcription start site region 84988	1138 bp downstream
Tssr84989	transcription start site region 84989	1080 bp downstream
Tssr84990	transcription start site region 84990	975 bp downstream
Tssr84991	transcription start site region 84991	929 bp downstream
Tssr84992	transcription start site region 84992	795 bp downstream
Tssr84993	transcription start site region 84993	744 bp downstream
Tssr84994	transcription start site region 84994	285 bp downstream
Tssr89390	transcription start site region 89390	1787 bp upstream
Tssr89391	transcription start site region 89391	1768 bp upstream
Tssr89392	transcription start site region 89392	1738 bp upstream
Tssr89393	transcription start site region 89393	1206 bp upstream
Tssr89394	transcription start site region 89394	922 bp upstream
Tssr89395	transcription start site region 89395	877 bp upstream
Tssr89396	transcription start site region 89396	860 bp upstream