rs29639497 SNP Detail

Summary

• ID
  rs29639497
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41490242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG GCTTTCCAAA TCCCAGGACC
  R
  TAAGTGGCAA ATTAGTGCAC ATTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46326398	mCV23834233	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A
ss61386163	NES16764742	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A		G	G	G	G		A	G	A	A		G
ss136358648	ENSMUSSNP3171575	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss322927314	CHEV_9_41387029	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29639497					SNP	G	G	G	G	G	A	A	G	G	G	G	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386163	NES16764742	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41490242 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	58 bp proximal
Rr677061	regulatory region 677061	562 bp proximal
Rr677062	regulatory region 677062	1303 bp proximal
Tssr84512	transcription start site region 84512	714 bp upstream
Tssr84513	transcription start site region 84513	742 bp upstream
Tssr84514	transcription start site region 84514	904 bp upstream
Tssr84515	transcription start site region 84515	989 bp upstream
Tssr84516	transcription start site region 84516	1024 bp upstream
Tssr84517	transcription start site region 84517	1057 bp upstream
Tssr84518	transcription start site region 84518	1757 bp upstream
Tssr84519	transcription start site region 84519	1805 bp upstream
Tssr84520	transcription start site region 84520	1957 bp upstream
Tssr84521	transcription start site region 84521	1998 bp upstream
Tssr88995	transcription start site region 88995	566 bp downstream
Tssr88996	transcription start site region 88996	600 bp downstream
Tssr88997	transcription start site region 88997	1840 bp downstream