rs29639531 SNP Detail

Summary

• ID
  rs29639531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19930457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGATAAG CAGCAAAATG
  TGCCATGTTT TATGTGAAAG AACTTAAATC TATGAAGTTC TTTGCAGATA AAAGGTATTG
  TTATGGAAAA GGAAATTACA CACATGACTG TTTATCACCT GCATGTGCCT TCAGATGTTT
  TGTTGTCTGT AGCTCCACAT CTAAGAGTCT GTCGCTGCAC AAGCACTACC TACTCCTGTT
  Y
  GGAACAGCCT GATATGCTGT TCTGTCCTTC GCAGCATGTC TCCCTTTGCC TTCTACCACG
  GGGAAGATTC ATGATGTCTT AGTTAGGGTT TCTATTGCTC TGATGAAACA CCACGACTAA
  AAGTAAGATG GGAAGGAAAG GGCTTATTTG GCTTACACTT CCACATCACT ATTCATCACT
  GAAGGAAACC ACAAGGAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866440	NES10963854	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29639531					SNP	C	C	C	C	C	C	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866440	NES10963854	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19930457 () rs orientation: forward

Symbol	Name	Function Class
Chst7	carbohydrate sulfotransferase 7	within coordinates