rs29639619 SNP Detail

Summary

• ID
  rs29639619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108464038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTGCAC AGGGTTGGTG
  GCCACGCCAG CCTGAATCTG AAGTAATATT GTTACCCTCA TACCTCCACC CCTGAAGGAC
  CTCCCCTACA ACAATTTACC ATTTTGTCTT TGCCAAAAAA AAAAAAAAAA AAAATGAAAC
  ACGTCAGCCT AAGTAATAAG TACACCAGGT TTCTATTTGC CTGGTTACAG AAAGCCAAAA
  R
  TGAAATAGGC CATTTGTTTC TTCCTGTACT TTTTAATACA TTCTGATAAG AAAACATCTC
  AAAATATAAT AATGCAAAAA CATTTAAGCC AAGAGGATCC ACAAGGAAGC TGCAGAATGA
  AAGCTGTTTA AGAAGGGAAG CTGTTTTCTA GACCAGAGTC AGAGAAGCCA GCCCTATTTG
  AAAACAAGAC ATTAAATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866127	NES10725941	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29639619					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866127	NES10725941	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108464038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13704	CpG island 13704	1851 bp distal
Gm43435	predicted gene 43435	within coordinates
Gm65135	predicted gene, 65135	1907 bp upstream
Rr367531	regulatory region 367531	1776 bp downstream
Rr583260	regulatory region 583260	1918 bp distal
Rr583261	regulatory region 583261	1417 bp distal
Rr583262	regulatory region 583262	1838 bp distal
Rr583263	regulatory region 583263	1200 bp proximal
Rr583264	regulatory region 583264	1779 bp proximal
Tmem167b	transmembrane protein 167B	mRNA-UTR
Tssr35152	transcription start site region 35152	1969 bp upstream