rs29639860 SNP Detail

Summary

• ID
  rs29639860
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44391217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGGGAC TAGTGACTAG
  TGAGGGGCTC TGGGCAATCT GACTGCAGCC TCGAAAACCC CACCCTCAGA ACTCTGACAG
  GCAGTGCCCC GAGCCAATGA TTGAAGTTAC TGTGGGGCTT GAAGTTAACC CTTTCTTGGG
  TCCTCAGAAT ATTGAGCCTC TTCCACATAA CTTCCCTTGA CCGGCGTCCA CCTACTCGGG
  S
  TAGTGCACGC TGGAGAGGAG TGCCAGCATT ATTTGTGCAT TCGGATCACT ATAGAAACAG
  AAAGATGGCT AATCTCTGAA AACAAGCAGT CCCAGTCCTG GGCGCCCGCT CCACACTGTC
  CAAAAAGTAC AAGATGCGGT TGTGAGTACA GCTTCCAGAA ACAGTTTCGA GCCGTGCTGG
  CACAGCGACA TCGTGTCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46324267	mCV22924089	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
ss136396201	ENSMUSSNP4592410	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29639860					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44391217 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1186 bp distal
Cpgi21660	CpG island 21660	427 bp distal
Cpgi21661	CpG island 21661	within coordinates
Gm10023	predicted gene 10023	within coordinates
Gm47204	predicted gene, 47204	123 bp upstream
Gm47205	predicted gene, 47205	1594 bp downstream
Rr368728	regulatory region 368728	156 bp upstream
Rr677665	regulatory region 677665	1451 bp distal
Rr677666	regulatory region 677666	1926 bp distal
Rr677667	regulatory region 677667	159 bp distal
Rr677668	regulatory region 677668	537 bp distal
Rr677669	regulatory region 677669	within coordinates
Rr677670	regulatory region 677670	330 bp proximal
Tssr89164	transcription start site region 89164	177 bp upstream
Tssr89165	transcription start site region 89165	140 bp upstream