rs29639907 SNP Detail

Summary

• ID
  rs29639907
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75986643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA CAGGGCAGAA TGCAAGAGAC
  M
  GAAGATCATG GTGGTTCTCA AAATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39103793	mCV22680271	ABI	CRAMUS_MOUSE	f	SNP		A					C		A
ss52665272	NES15473305	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		C	A	A		C	A	A	C		A
ss144639030	ENSMUSSNP95070	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss324437217	CHEV_13_75975972	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29639907					SNP	A	A	A	A	A	A	C	C	A	A	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665272	NES15473305	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75986643 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	1361 bp upstream
Rr482791	regulatory region 482791	1876 bp distal
Rr482792	regulatory region 482792	664 bp distal
Rr482793	regulatory region 482793	854 bp proximal
Tssr120401	transcription start site region 120401	1350 bp upstream
Tssr120402	transcription start site region 120402	1373 bp upstream
Tssr120403	transcription start site region 120403	1478 bp upstream
Tssr120404	transcription start site region 120404	1547 bp upstream