rs29640025 SNP Detail

Summary

• ID
  rs29640025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101865001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAGTGTG GATTCATGTG TGCCTGCATT TGCACACACG
  TGAACATACG TGGAACACCA CAGCTGCTGT GCTGTGTCTG TGAGCTTTGG CTGTCACTGG
  R
  ACATTTCCCA GGAGCCAAGA AAGCTGCTAA AGCCCAAGAC TCTGATCTGT TGAACTCTCT
  AACCAAAATG AATGTCCTAA ACCCTGCATC TACTGCGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46324446	mCV23562183	ABI	CRAMUS_MOUSE	f	SNP	A	A			G
ss61446076	NES16829091	PERLEGEN	MM_PANEL2	f	SNP		A	A	A		G	G	G	A
ss136869315	ENSMUSSNP6016218	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29640025					SNP	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61446076	NES16829091	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101865001 () rs orientation: forward

Symbol	Name	Function Class
Ephb1	Eph receptor B1	within coordinates
Gm31326	predicted gene, 31326	1458 bp upstream
Gm69124	predicted gene, 69124	1359 bp upstream
Rr198441	regulatory region 198441	1001 bp distal
Rr198442	regulatory region 198442	within coordinates
Tssr86718	transcription start site region 86718	1391 bp upstream