rs29640054 SNP Detail

Summary

• ID
  rs29640054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45577187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC AAATGAGATA GATTTTAGGG
  Y
  GGGCCAACTC AGAGCCCTGG ATCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45848970	mCV23485828	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss148351363	ENSMUSSNP1399780	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321526926	CHEV_5_45811084	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29640054					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45577187 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd615e	DNA segment, Chr 5, ERATO Doi 615, expressed	within coordinates
Gm71490	predicted gene, 71490	239 bp upstream
Rr611049	regulatory region 611049	within coordinates
Rr611050	regulatory region 611050	118 bp proximal
Rr611051	regulatory region 611051	394 bp proximal
Rr611052	regulatory region 611052	483 bp proximal