rs29640593 SNP Detail

Summary

• ID
  rs29640593
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124195230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATCCGCAAAC GCTCGGCAGT CACGGTTTCA AAATAAAAAA TGGAAAAAAA AAAAAAATCC
  TTGGCCCGGG CGCAGGCTGA TGGCATCAGC AAGTCAGGTC GCCGCGTGGA GGCCGTGCGC
  GCATGCGCAG TGACTTCCCC CGGCCACGGG CTCGCATGCG CTGGGGGTGT GCGCCGGCTT
  GGGGTCCCGA TGCGTATGCG CGTTGGGTTT CTGTTGCAGG CAGCGCACAT GCGCATTGCG
  TTTACTTCCA AGTTGGCTGC ACATGCGTGT CGCAGAAGTG CGGGTCTGGC GAGTACAAAG
  M
  AGCCTGGCTT CGCGCATGCG TATCGTGACG TATGACAGCG AGTATGGCCT GGTGCCATCA
  GTCATCCTGG AAGCTCCGCT CACTTTTAAA AAATAATCTC ATTGGTGCCT AATTGTCATT
  TATTTACTTA TCATTTGCAT ATTCATGAAT CTCGTTTACA TATTCTCAAG GTGCATTTGT
  TTATCGCCCC CCAAGCTGGA TTGGAAGATG ACGTCACCCT GTTGTTACCC ACCGAGTGAC
  GCCTGGATGC TCCTCAGGCT CCGCCCCTTT TGGTCAGGAA TTGATGTCTT GAAACATTGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46326037	mCV24427025	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss134041031	ENSMUSSNP2302880	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29640593					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124195230 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	within coordinates
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	182 bp upstream
Tssr3090	transcription start site region 3090	1972 bp upstream
Tssr3091	transcription start site region 3091	1489 bp downstream
Tssr3092	transcription start site region 3092	1461 bp downstream
Tssr3093	transcription start site region 3093	1441 bp downstream
Tssr3094	transcription start site region 3094	1389 bp upstream
Tssr3095	transcription start site region 3095	1188 bp upstream
Tssr3096	transcription start site region 3096	1108 bp upstream
Tssr3097	transcription start site region 3097	1032 bp upstream
Tssr3098	transcription start site region 3098	681 bp upstream
Tssr3099	transcription start site region 3099	578 bp upstream
Tssr3100	transcription start site region 3100	553 bp upstream
Tssr3101	transcription start site region 3101	441 bp upstream
Tssr3102	transcription start site region 3102	298 bp upstream
Tssr3103	transcription start site region 3103	256 bp upstream
Tssr3104	transcription start site region 3104	164 bp upstream
Tssr3105	transcription start site region 3105	54 bp upstream