rs29640945 SNP Detail

Summary

• ID
  rs29640945
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:41864387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT TGCAATTAGA ATGAAACCGT
  S
  TGTAGCGGCC CTTGGAGCCC AAATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45848981	mCV22767910	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss148314815	ENSMUSSNP6778033	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29640945					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:41864387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15822	CpG island 15822	within coordinates
Gm72243	predicted gene, 72243	1192 bp upstream
Gm72274	predicted gene, 72274	77 bp upstream
Rab28	RAB28, member RAS oncogene family	within coordinates
Rr399068	regulatory region 399068	1047 bp upstream
Rr610697	regulatory region 610697	within coordinates
Rr610698	regulatory region 610698	98 bp proximal
Rr610699	regulatory region 610699	1067 bp proximal
Rr610700	regulatory region 610700	1499 bp proximal
Tssr46070	transcription start site region 46070	126 bp upstream
Tssr50838	transcription start site region 50838	128 bp upstream
Tssr50839	transcription start site region 50839	373 bp downstream
Tssr50840	transcription start site region 50840	626 bp downstream
Tssr50841	transcription start site region 50841	925 bp downstream
Tssr50842	transcription start site region 50842	1074 bp downstream
Tssr50843	transcription start site region 50843	1091 bp downstream