rs29640983 SNP Detail

Summary

• ID
  rs29640983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32605336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGAATGC AAATTCCATG TGTCCAACAT TAATTAAGTG
  ATCAACAGTC CCGATTGGAT GATCAGTGTC CTCAAAATGT ATAAATATCT TAACTGGATC
  Y
  CTGTCAGTGC TTCTCACCCT ACAGTAAGTT CCAACCAGAT CCTGTTGTAC ACGTGGGGCT
  TGAGATGTAT CGAACATTTG CCATCAGAGA CGTCCCCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46325436	mCV22735198	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss136249634	ENSMUSSNP2597388	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29640983					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32605336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	1438 bp proximal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr199954	regulatory region 199954	1536 bp distal
Rr203547	regulatory region 203547	814 bp distal
Rr206170	regulatory region 206170	1264 bp proximal
Rr401307	regulatory region 401307	1735 bp upstream
Tssr84270	transcription start site region 84270	1638 bp upstream
Tssr84271	transcription start site region 84271	1652 bp upstream
Tssr84272	transcription start site region 84272	1675 bp upstream
Tssr84273	transcription start site region 84273	1711 bp upstream
Tssr84274	transcription start site region 84274	1766 bp upstream
Tssr84275	transcription start site region 84275	1965 bp upstream