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rs29641011 SNP Detail
Summary
  • ID
    rs29641011
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr13:98830336 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AAAAG AGTATTATTA CCTGACCTCG
    M
    AAGCAATGGT TAAAGGGCAT GCTGG                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss39104211 mCV24334912 ABI CRAMUS_MOUSE f SNP C A C A
ss145056214 ENSMUSSNP3313451 ENSEMBL ENSEMBL_Sanger f SNP A
ss324500817 CHEV_13_99463783 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs29641011 SNP C A C A A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:98830336 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi6012 CpG island 6012 870 bp proximal
Rr281821 regulatory region 281821 within coordinates
Tmem171 transmembrane protein 171 within coordinates
Tssr120815 transcription start site region 120815 1506 bp downstream
Tssr123632 transcription start site region 123632 1643 bp upstream
Tssr123633 transcription start site region 123633 1611 bp upstream
Tssr123634 transcription start site region 123634 1103 bp upstream
Tssr123635 transcription start site region 123635 1094 bp upstream
Tssr123636 transcription start site region 123636 1041 bp upstream
Tssr123637 transcription start site region 123637 1021 bp upstream
Tssr123638 transcription start site region 123638 683 bp upstream
Tssr123639 transcription start site region 123639 941 bp downstream
Tssr123640 transcription start site region 123640 978 bp downstream
Tssr123641 transcription start site region 123641 997 bp downstream
Tssr123642 transcription start site region 123642 1065 bp downstream
Tssr123643 transcription start site region 123643 1196 bp downstream
Tssr123644 transcription start site region 123644 1732 bp downstream
Tssr123645 transcription start site region 123645 1856 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory