AAAAG AGTATTATTA CCTGACCTCG M AAGCAATGGT TAAAGGGCAT GCTGG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|
ss39104211 | mCV24334912 | ABI | CRAMUS_MOUSE | f | SNP | C | A | C | A | ||
ss145056214 | ENSMUSSNP3313451 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | |||||
ss324500817 | CHEV_13_99463783 | CHEVERUD | SCREENING_POP | f | SNP | A | A | ||||
SNP Consensus Information | |||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs29641011 | SNP | C | A | C | A | A | A |
Location: Chr13:98830336 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi6012 | CpG island 6012 | 870 bp proximal | ||||||
Rr281821 | regulatory region 281821 | within coordinates | ||||||
Tmem171 | transmembrane protein 171 | within coordinates | ||||||
Tssr120815 | transcription start site region 120815 | 1506 bp downstream | ||||||
Tssr123632 | transcription start site region 123632 | 1643 bp upstream | ||||||
Tssr123633 | transcription start site region 123633 | 1611 bp upstream | ||||||
Tssr123634 | transcription start site region 123634 | 1103 bp upstream | ||||||
Tssr123635 | transcription start site region 123635 | 1094 bp upstream | ||||||
Tssr123636 | transcription start site region 123636 | 1041 bp upstream | ||||||
Tssr123637 | transcription start site region 123637 | 1021 bp upstream | ||||||
Tssr123638 | transcription start site region 123638 | 683 bp upstream | ||||||
Tssr123639 | transcription start site region 123639 | 941 bp downstream | ||||||
Tssr123640 | transcription start site region 123640 | 978 bp downstream | ||||||
Tssr123641 | transcription start site region 123641 | 997 bp downstream | ||||||
Tssr123642 | transcription start site region 123642 | 1065 bp downstream | ||||||
Tssr123643 | transcription start site region 123643 | 1196 bp downstream | ||||||
Tssr123644 | transcription start site region 123644 | 1732 bp downstream | ||||||
Tssr123645 | transcription start site region 123645 | 1856 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/17/2024 MGI 6.24 |
![]() |
|