rs29641011 SNP Detail

Summary

• ID
  rs29641011
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98830336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG AGTATTATTA CCTGACCTCG
  M
  AAGCAATGGT TAAAGGGCAT GCTGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39104211	mCV24334912	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss145056214	ENSMUSSNP3313451	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss324500817	CHEV_13_99463783	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29641011					SNP	C	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98830336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6012	CpG island 6012	870 bp proximal
Rr281821	regulatory region 281821	within coordinates
Tmem171	transmembrane protein 171	within coordinates
Tssr120815	transcription start site region 120815	1506 bp downstream
Tssr123632	transcription start site region 123632	1643 bp upstream
Tssr123633	transcription start site region 123633	1611 bp upstream
Tssr123634	transcription start site region 123634	1103 bp upstream
Tssr123635	transcription start site region 123635	1094 bp upstream
Tssr123636	transcription start site region 123636	1041 bp upstream
Tssr123637	transcription start site region 123637	1021 bp upstream
Tssr123638	transcription start site region 123638	683 bp upstream
Tssr123639	transcription start site region 123639	941 bp downstream
Tssr123640	transcription start site region 123640	978 bp downstream
Tssr123641	transcription start site region 123641	997 bp downstream
Tssr123642	transcription start site region 123642	1065 bp downstream
Tssr123643	transcription start site region 123643	1196 bp downstream
Tssr123644	transcription start site region 123644	1732 bp downstream
Tssr123645	transcription start site region 123645	1856 bp downstream