rs29641247 SNP Detail

Summary

• ID
  rs29641247
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28198077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTAGTC TACCCTTTGC
  TCCCCTTTCA GCTCCCTTCT ACATAGAGGT ACAAGAAGGT TCCCTCCAAG CTTACGTTGA
  ACCAACATGA AGAGATGGAA CCTTACTGAA GAGGTTGTTA AGCCATCAGT GCTCTGACAT
  GAATGAATTG ATGCCATTAC CAAAAAGCAG GTCACTAACA AGAACAGTCA TTAAGTCAAC
  M
  TATTCAATCC ATATTCTCTT CCTGCCTTGA CTGAGCTCAT GCCTAGCTGC CATGTCCTAA
  GGTAGCACAC TCTGGCCAGA TGTTGACATG TGCTCTAGAA CCTCCTAGGC TCCAATACTG
  TGGGCATTGA TTTGTATTAT TTATGAATTG CCCTCTGTTT CTAGCTAGCA GAGAGTAGAA
  TAAGATATCA ATCAAATGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46865565	NES10831050	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29641247					SNP	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46865565	NES10831050	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28198077 () rs orientation: forward

Symbol	Name	Function Class
Rr574537	regulatory region 574537	808 bp proximal