rs29641280 SNP Detail

Summary

• ID
  rs29641280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:71999253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC AGGATGGTAG AGGACGATAC
  R
  TTACTGGTGT CTAACACAGT AATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss46325931	mCV25308035	ABI	CRAMUS_MOUSE	f	SNP	G	G			A		G
ss61420200	NES16798285	PERLEGEN	MM_PANEL2	f	SNP		G	A	G		G	G	G		G		G
ss136619106	ENSMUSSNP1941170	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					G
ss323001877	CHEV_9_71939778	CHEVERUD	SCREENING_POP	f	SNP									A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs29641280					SNP	G	G	A	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420200	NES16798285	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:71999253 () rs orientation: forward

Symbol	Name	Function Class
Tcf12	transcription factor 12	within coordinates
Tssr90471	transcription start site region 90471	1684 bp upstream
Tssr90472	transcription start site region 90472	1573 bp upstream