rs29641338 SNP Detail

Summary

• ID
  rs29641338
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110486903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG CCCAGCAGGC TTCTGCTTTC
  S
  TTGGCAGCCT AGAGACCCAT CAGAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46324662	mCV25039923	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss136958703	ENSMUSSNP5156595	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss323193706	CHEV_9_110560339	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29641338					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110486903 () rs orientation: forward

Symbol	Name	Function Class
Ccdc12	coiled-coil domain containing 12	within coordinates
Cpgi22386	CpG island 22386	888 bp distal
Gm42470	predicted gene 42470	1380 bp downstream
Gm69744	predicted gene, 69744	1087 bp upstream
Rr401702	regulatory region 401702	1209 bp downstream
Tssr87398	transcription start site region 87398	1358 bp downstream
Tssr87399	transcription start site region 87399	1291 bp downstream
Tssr91646	transcription start site region 91646	1416 bp upstream