rs29641547 SNP Detail

Summary

• ID
  rs29641547
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123271002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCACAAGCAA TAACTGGAAA CAGGTATCCG TTGGGAATCA AGATAATTTG TGTATACAAA
  ATAAAATCTG TTTTTCATAT ATGCTTTAGA GGCCATTGTA GGTCTTTACA ATTTGAGGTC
  CATTTACACA AACCTCTTAA TCATTTGGTG TGAAATCCGG CTTTCAGTGC ATCTGTCTGT
  TAAGTAATTT GAGGTTTTTA CTTGTAAAGG AAAGAGGAGC ACTGTGATGT TATATGATTC
  CTGAAGCATC TCACATGCTT GTCACTCTGG GTAAACTGTA CCTCTAAGCT TGGCAGAACC
  N
  AGCTAGTACA TCACTCTAAC ACTTGTGTAT CAGAGCAGAA GATGGCATTG CAAATCCATT
  GAAAGTTTTT CTCCTGCTGG CTTATAATGT GTTCCTCATA ACATTCAAAA GATGTAAGAA
  AGGGTGGTAT ACTTTTGTAA TCCTAGCACT CAATCGGCCA ACACAGAAGG ACGGTTGCAA
  ACTTGAGGCT GGTCTTGGCT GCATAGTGAG CTTTAGGCCA TATGGAGAGA CTATCTCAGG
  GCCCCAGCAT TTATAGACCC TCTGAAAGAT CCCAGCTCTT GGGAGGCAGA GGCAGGTAGA
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46326809	mCV23337010	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	T
ss46349898	mCV23336999	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss46390310	mCV23337009	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29641547					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123271002 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	802 bp distal
Rr203065	regulatory region 203065	969 bp distal
Rr208064	regulatory region 208064	1202 bp distal