rs29641956 SNP Detail

Summary

• ID
  rs29641956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28198560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGTTTATT GCAGCCGTTG
  TTAATGGTAG GAAAGAAGTC CAAACTGATG TTTCACTAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAAA GAGAACTTCT GAAATTCTTC
  TCTACTTGTT TTAAGTGTCT GGGAATGGAG CCTAGGGACT CACAGATGCA AGCAAGTTCA
  Y
  TGCTATGAGG TACATTGCCA GACCACCTTT ATATATTTAT CCCGAGAACA GGGATTCCTA
  TAATTTTACA TTATGTTACC TAGTAAAAAA TTGTAAGCAA GATTCACAGA CTACACCTAG
  CTCATAGACA TGTTTAACTA AATCATGCAA TGTTGTCTAA TATTGAGAAT TAGTTACCAA
  ATCTTGATTC CCACAAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46865574	NES10830951	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29641956					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46865574	NES10830951	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28198560 () rs orientation: forward

Symbol	Name	Function Class
Rr574537	regulatory region 574537	325 bp proximal