rs29642448 SNP Detail

Summary

• ID
  rs29642448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115909592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTTTGGGGT CTTCTTTGCT CTCTTTATGA ACTACTTCTG GGCAGTTCTA ACAAGCAAGT
  CATAGTCGAC CAAGTCTATC TGGTCATGGT TCTTGTAGCT CAGAAGGTTG GAGGCCTTGA
  TGTCACTGTG CACATACTCA TGAGTGTATT CCAGGATACC TAAAATTCAC AAGCCATGCT
  GCAAGACAGT TCCCCAAGAA AACCTTTTGA CATTTGTTTC AGGTATTTTC TGACAGTTAC
  TCCATTGTTT TCCCAGTTGT AAAGTGAATT TTGTTAAACT CATTTAGTCA TACCGTAGGT
  Y
  TTTCACATCA AAACAGCTCA AGGAAGCAGT ATGGTCATTT ATACTAGAGT TGTAATGGAA
  GAAATACAGA TCCAGGAGTT TGAGTCCAGA TGTGTCTGTA AGTGAGTTGA TAGACATATT
  AGTTATTTTT CTCACTGCTG TGGCAAGATG GCTCATGGAA CGAAGGGCCA TGGAATGGTC
  CATGGTGGAT CAGGTGGTTC ATCTCACAGA ACTTGGAAAG AGGGAAGAAT GCAGAAAGGT
  CAAGAACAAG ATGTAGTTCT TAAGCATACA CGCACAGTTG ACAGGAGAGA TGGCTCAGCG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46326820	mCV23303960	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss47789533	NES11989332	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29642448					SNP	C	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47789533	NES11989332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115909592 () rs orientation: forward

Symbol	Name	Function Class
Gm18328	predicted gene, 18328	58 bp upstream