rs29642506 SNP Detail

Summary

• ID
  rs29642506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44438703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG CTCTCTCTGC CCCTGCTCTC
  Y
  ACCCCTGCTC TGTCCCATCC TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46325249	mCV24320732	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss136396636	ENSMUSSNP70659	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss322941044	CHEV_9_44335489	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29642506					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44438703 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	962 bp upstream
Rr200338	regulatory region 200338	697 bp proximal
Rr206318	regulatory region 206318	1502 bp distal
Rr401337	regulatory region 401337	615 bp downstream
Tssr89167	transcription start site region 89167	1434 bp upstream
Tssr89168	transcription start site region 89168	983 bp upstream
Tssr89169	transcription start site region 89169	966 bp upstream
Tssr89170	transcription start site region 89170	905 bp upstream
Tssr89171	transcription start site region 89171	891 bp upstream