rs29642780 SNP Detail

Summary

• ID
  rs29642780
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41442424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACGTCA TAGTTCAGTG
  TAATGAAATC TCTGCTAAGA TGAGTTGGGA AAGCTCTCTT CCAAGTTTCT TTTAGCAGTG
  CTTGCTAGTT AATTCTGCTT GTTTTTTCTG ACATGCAAAC AAACAAACAA AATGGGGGGG
  CAGATCTCAA TAACCTTTAC CACAGAATTG CAGAAGTTAA AAGAATTACC TTGCATCCAG
  S
  CACTTGTTCT ATCTCTTAGA ATCTGTCTCA TTCTTCTTAT TGGCCATATT GACATTGGTT
  TGGGCTAAAT AGATGAGGAT TCTGATCAAA TAAAGCTCAC CTGAAGCTCA CTTCATCAAG
  CAAATGAAAA ACTAGGTCTA CTGGAGGAGA TACCTAGTTT CTGGCATGAA ATGACCCAAT
  CGCAAAATCT GTTGTTGGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46325455	mCV24305845	ABI	CRAMUS_MOUSE	f	SNP		C					G		G
ss61386551	NES16765680	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C		G	G	G	C		G	C	G	G		C
ss136357121	ENSMUSSNP5962704	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							G
ss322926771	CHEV_9_41339211	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29642780					SNP	C	C	G	C	G	C	G	G	G	G	C	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386551	NES16765680	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41442424 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	within coordinates
Mir100	microRNA 100	297 bp upstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677056	regulatory region 677056	1227 bp proximal
Rr677057	regulatory region 677057	1728 bp proximal
Tssr84510	transcription start site region 84510	364 bp upstream
Tssr84511	transcription start site region 84511	870 bp upstream