rs29642861 SNP Detail

Summary

• ID
  rs29642861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28199045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTTTTG CAGATGTAAA
  TTGGTGCTGA GATGGTCCAT ACATTTTTAC CCAGACTCCC AGAGAACCAT AGCATCCTAT
  CCTAGTGTCT TAGAGCAATG TCACTGTGAG AGCAAGAGGC CATGTAGAGA GTGAGATTGG
  GATGACAGCC AGCATCCATT GCCATATGCA GTGAGGAGGC CATGCAAGGT CATACAGATC
  Y
  GCCAAACTGC CTAGGAATAC AGCCAAAGGA TTTCTTAGCA AAACCCAGCC CAAACTGAGT
  CATAGAACTA GGCCCAAGTA AAATTGGCAC TGCCTTAGTA GTTTGTGACA CCACAGTAGG
  TCATGGATAG AGACAAATTT CATTAGAGCA TTCTGTTTTT CCTTTTGCAC ATTTTAATTT
  CTCTGTGGCC TCATGTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46865589	NES10830956	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29642861					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46865589	NES10830956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28199045 () rs orientation: forward

Symbol	Name	Function Class
Rr574537	regulatory region 574537	within coordinates