rs29643005 SNP Detail

Summary

• ID
  rs29643005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108466335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACAAGTTC TTCATCTTTA
  TCCCTTGGTT GGCAGTTGAT GAGTTGGAGG GTTTGGAATT CATTTGATAA ACAGGACGTA
  AAAGGCCATT ACAATGCAGG CAATTGCAAC AGCAGCATGC AGCCGGGTTC CAATCACAGC
  AGCTAGAGGA CAAACAGAAA GAGACGTCAT ACCAGGCTCT TCACAAAAGC CTTGCTGCTT
  Y
  CAAACCACGT TCTGAATTTC TAAAGAGAAC CACAGGTTTC GAGAGTCTGG AAATGTTCTT
  AAAGAACACC CTTATGCTCT AGGCTCTACA TGGATTGCTT ACCCCGGCCC CTTTTCCCTT
  TTTGAGATAG AACCACACTG TGTAGCCCTG GCTGGCTTCC AATTTGTACC TAGAACAAGA
  ATGTCCTTGA ACTAAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46866157	NES10725832	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29643005					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866157	NES10725832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108466335 () rs orientation: forward

Symbol	Name	Function Class
Rr583263	regulatory region 583263	825 bp distal
Rr583264	regulatory region 583264	237 bp distal
Tmem167b	transmembrane protein 167B	Intron