rs29643008 SNP Detail

Summary

• ID
  rs29643008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108466666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCACACTG TGTAGCCCTG
  GCTGGCTTCC AATTTGTACC TAGAACAAGA ATGTCCTTGA ACTAAGAGAT CTGCCTGTCT
  GTCTGCCTCT GTCTCCCAGG GCTGGGATTA AAGGTGTGTG CTCTCATGCC TGTCCTCCCT
  AACCCTTTTA GAGACAAAGG CTCACTATGC AATAGAATTC TAGGGATGTG TCACCATGCC
  R
  GTCCTTATTT TACCCTATTT AAAAAATATT TATATAGAAT TCCTGATGAA GGTGCCCAAA
  ATATAAGGTA AGGATCCAAT GTGTTCTCTT AAAAACAAAA ATAAGTGGAA AACTATTCTT
  CCTGCTAAGA GGAGTTTCAG GCCAGGCTAA AATGATCTAA CTTGTAAAAT ATCTCCACCT
  CACCCCATGA GACCAAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46866160	NES10725781	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G		A	G	A
ss135585620	ENSMUSSNP6745100	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29643008					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866160	NES10725781	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108466666 () rs orientation: forward

Symbol	Name	Function Class
Rr583263	regulatory region 583263	1156 bp distal
Rr583264	regulatory region 583264	568 bp distal
Tmem167b	transmembrane protein 167B	Intron