rs29643100 SNP Detail

Summary

• ID
  rs29643100
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77920338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAAGTTC ATTGCAATGA
  GTCGTTGGTC TGGTACGAGG CCTCTGGCTT CTGCTACTCT ATCAGTACTA TAACCAAACT
  GGGACTCTTC ATGGATGTCC TGATGTTGCC TTGTGTCATG GAGATCCCGT GGTTTTGGAT
  CTATAAGAGT GGCTCCTTCA TGCACTCCAG CAGTTCATCC ACGGGGTAGA TGTTGGGGTG
  K
  ACCAGTTTAA AGCCCTGATC TCTGCCTGAG AGGTATCTGA GCTGGTCACC CCACCCGATC
  CCCTGCTATC ACACCCTCAG GGATGGCTCA CTAGCAATGC CCCCAGACCA GATCCAGCTC
  TATCCTGCTG CCCAGATGAG GTACAGGGCC TGATCCCCCA AATGCTGCAG CAGGTGAGGG
  GCAAGAGCAG CTCTCCCACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46327022	mCV22525225	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss136663611	ENSMUSSNP755571	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29643100					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77920338 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	916 bp downstream
Gm39375	predicted gene, 39375	1962 bp upstream
Gm69108	predicted gene, 69108	within coordinates