rs29643113 SNP Detail

Summary

• ID
  rs29643113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19934111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAAATGT AATTGAGGAA
  AATATGTAAT AAAAAAGAAA AAACTGTAAA AAAAAAAAAC ATAGGCATGA TGGAAAATAT
  ATTGCAGGCC AAAAAGTATA CATAAATTTA AATATTATCC GTTACAATTG GTTCCACAAT
  TGCTATGTAA TGTATCAGGA ATGTCACAGA TAGGTGTAAC TTTTTAATGG AATTTTTTTC
  Y
  ACTGTTAAGT CTGGTTATTT ATAAAGAAAA ACATTAAGCC AATAAAAAAG CCTACAAAAA
  AAAAAGCCTA CAAACTTAGC ATTTGGATAA AATCTAATCC CATTCGATGC CAAACTCTGT
  CAATGCAAAA ACTCACCTCA AAGGGAACAA GGGGTAGTTT ATGTTGGAGC AAACCATATG
  TGATCCTGGC ACCAAACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866482	NES10963757	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29643113					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866482	NES10963757	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19934111 () rs orientation: forward

Symbol	Name	Function Class
Chst7	carbohydrate sulfotransferase 7	within coordinates
Rr9641	regulatory region 9641	1111 bp distal
Rr9642	regulatory region 9642	1490 bp proximal