rs29643509 SNP Detail

Summary

• ID
  rs29643509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46036926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTCCTA TTCTACACAT
  ATGTGGTGTT GATGTAAAAA GATAAAAAAG AAAGGGCTGG AGAGATGGTT CAGTTTTTAA
  TAGCACTGAC TGCTCTTCCA GAGGTCCTGA GTTAAATTGC CAGGAACCAC ATGGTGGCTC
  ACAACCATCT GAAATGGTAT CCCAATGCTC TCTTCTGGTG TGTCTGAAGA CAGCGACAGT
  R
  TACTCACATA CATAAGATAA ATAAATAAAT TAGAGAGAGA AAAAAGGGGG AGAGAGGGAG
  AGGGAGAGAG AGAAAGAGAA CCCAGCAAGC AGGATAATTA ATGAACCACG TGTAATAAAA
  GTGTGGGTCT CTTCTTTCAG AGGTCCTGAG TTCAAGTCCC AGCAACCATA CAATGGCTCA
  CAACCATCTG TAATGGAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46328191	mCV25177251	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss136423292	ENSMUSSNP7081151	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29643509					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46036926 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	722 bp proximal
Rr678057	regulatory region 678057	1791 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	1605 bp upstream