rs29643748 SNP Detail

Summary

• ID
  rs29643748
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106527332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA ATTGCTTGGG TTCCCCAAGC
  S
  AGATAAAGAA CCAACAGCCA GAAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46326540	mCV23588654	ABI	CRAMUS_MOUSE	f	SNP		C	C				G
ss47774046	NES11270652	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		G	G	C	G		G	C	C	G		C
ss136939203	ENSMUSSNP3479688	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						G
ss323186545	CHEV_9_106552464	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29643748					SNP	C	C	C	C	C	C	G	G	G	C	G	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774046	NES11270652	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106527332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22271	CpG island 22271	1921 bp distal
Cpgi22272	CpG island 22272	289 bp proximal
Grm2	glutamate receptor, metabotropic 2	within coordinates