rs29644016 SNP Detail

Summary

• ID
  rs29644016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113620724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAA CCTGTGAGAG AATTGTGCAG
  Y
  CAGTGTCTGA TAGGACAGGA GAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46327430	mCV23322799	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss61225181	NES16842648	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T		C	C
ss136989710	ENSMUSSNP4005985	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss323201091	CHEV_9_113700774	CHEVERUD	SCREENING_POP	f	SNP											T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29644016					SNP	T	T	T	T	T	T	C	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225181	NES16842648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113620724 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr198874	regulatory region 198874	1724 bp distal
Rr205836	regulatory region 205836	676 bp proximal
Tssr3045	transcription start site region 3045	1638 bp upstream
Tssr87530	transcription start site region 87530	1079 bp upstream
Tssr87531	transcription start site region 87531	1175 bp upstream
Tssr87532	transcription start site region 87532	1325 bp upstream
Tssr87533	transcription start site region 87533	1372 bp upstream
Tssr87534	transcription start site region 87534	1660 bp upstream
Tssr87535	transcription start site region 87535	1691 bp upstream