rs29644019 SNP Detail

Summary

• ID
  rs29644019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103225499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTT TGAGAGCTTT TTATACCTGG
  Y
  CTTAGGGAAC ACTTAGCATA CTGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46327433	mCV22613358	ABI	CRAMUS_MOUSE	f	SNP		T						C		C
ss52037667	NES15052388	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		C	C	T	C		C	T	T	C		T
ss136877141	ENSMUSSNP6102482	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
ss323160940	CHEV_9_103250630	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29644019					SNP	T	T	T	C	T	T	T	C	C	C	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52037667	NES15052388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103225499 () rs orientation: forward

Symbol	Name	Function Class
Rr202394	regulatory region 202394	645 bp proximal
Rr207098	regulatory region 207098	300 bp distal
Topbp1	topoisomerase (DNA) II binding protein 1	within coordinates
Tssr91191	transcription start site region 91191	576 bp upstream