rs29644393 SNP Detail

Summary

• ID
  rs29644393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19924293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTTCTC TGTCTCTACT
  ACCCTCTCAG CTACCCTCCC CATGCCGTGA ATAAACTCTA TTCTATACTA TACCATTGTA
  CAGCTGGTAC CTCAGTGGAG GAAGGGATAT CTCACTATGG GCCCACAGAG GCACACAACT
  ATCTATCAAC TGAGCTGTGA CTCCAGGTCC CTCTCCCATC TCAGAGTTAG TGTTGGAAGA
  Y
  AAAGCCAAAA GGGACAGTTG GAGGAGGATA ATTGTAATTT TATTGTCTCC ATTACTGGGC
  TTGAGGTTTT TATAACTAAC AACAGAAGTT ATTTACATTC TGCTCAGCCA TATATTTCTC
  CCCAAGTGAG CCCAGAGCAA CCTTTTTTGC TTAAAAAGGG AAAAGGAAAA ATATAATGGA
  AGCTATTAAT TTTATGTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866392	NES10963981	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29644393					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866392	NES10963981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19924293 () rs orientation: forward

Symbol	Name	Function Class
Chst7	carbohydrate sulfotransferase 7	1506 bp upstream
Cpgi22642	CpG island 22642	1377 bp proximal
Rr690370	regulatory region 690370	1079 bp proximal
Rr690371	regulatory region 690371	1105 bp proximal
Tssr160634	transcription start site region 160634	1481 bp upstream
Tssr160635	transcription start site region 160635	1527 bp upstream