rs29644901 SNP Detail

Summary

• ID
  rs29644901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19937127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGAAAG CAACAGAGAA
  TGATGAAGCA GCAACTTCAA TTGGTTGGGC CTTCTGTTCT CACACTTTAA AACCAGCAGG
  AAGTTTATTC TTGCCCCTCC CCCTCCTAGC TTCAAAGGTT GGAAATGGTA TGATTAAAAC
  ACTAAGTCTG TCTTCCTGAG TTATTCTACT ACAGCCAGGG GAGCCTCAGC AGGGCCAAAA
  R
  CCTCAATTGA GGCAACACAA ACTACAGCAT ACCCAGAAGG AAATTTCTCT TTGATGGCGC
  TCAGGCCAGT TCATTGGAAT ATGACTGAAT CTTTAAAGAA GCAAATCCAT TAAATCTTTA
  GAGAAGTAAA AGCCAATTTG TGATTTCATT GAATGTTAAA AAATGACCTC ACAATTCCGT
  TTATTAAGAC CAATTCTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46866500	NES10963708	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29644901					SNP	G	G	G	G	A	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866500	NES10963708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19937127 () rs orientation: forward

Symbol	Name	Function Class
Chst7	carbohydrate sulfotransferase 7	within coordinates
Rr9642	regulatory region 9642	1327 bp distal