rs29645005 SNP Detail

Summary

• ID
  rs29645005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50622425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCAGC TGGGCATTCA
  CCCAGGCCAC GTAGGCCTGT AGCTGTTGCT GGAAAATAAA AGGTGGAGAT AAGGGAAAGA
  ATGGCATATC AGTCTTATCC CCTAGCCTGT CCCTGTAAGG CAGCTCAAGA CAGTGAGGGA
  CAGGGTGACA TCTCTATCGG GGAGCAGAGA AAGGTCTGAA GATATATCAG GCCCAGAGCA
  Y
  GTTCCAAAAT CCCTAGCTTT AGGTTGACAC GCAGGGATAA GCTGACCTCT GACTTGTTCA
  ACACTGCAGA CACAGACAGA GACCAGTGTT CCCAGGTTGT CACTCCCACC TCCTGTGCTC
  TGCATATCGA GGCTGAGTCC AGGTCCCTGG CCAGGATTCA GGCTCAGTCA CTGCTGCTGG
  CATCCCACCC CAGTTCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46327038	mCV25205604	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss47707840	NES11324116	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29645005					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47707840	NES11324116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50622425 () rs orientation: forward

Symbol	Name	Function Class
Dixdc1	DIX domain containing 1	within coordinates
Gm39337	predicted gene, 39337	within coordinates